Index

A

add_path() (in module stream2.tl)

C

cal_qc_rna() (in module stream2.pp)

D

del_path() (in module stream2.tl)

dimension_reduction() (in module stream2.pl) (in module stream2.tl)

E

extend_leaves() (in module stream2.tl)

F

filter_genes() (in module stream2.pp)

G

get_weights() (in module stream2.tl)

graph() (in module stream2.pl)

I

infer_pseudotime() (in module stream2.tl)

L

learn_graph() (in module stream2.tl)

log_transform() (in module stream2.pp)

M

module stream2

N

normalize() (in module stream2.pp)

P

pca() (in module stream2.pp)

pca_variance_ratio() (in module stream2.pl) project_graph() (in module stream2.tl)

R

read_10X_output() (in module stream2) read_csv() (in module stream2)

read_h5ad() (in module stream2) read_mtx() (in module stream2) refit_graph() (in module stream2.tl)

S

seed_graph() (in module stream2.tl) select_variable_genes() (in module stream2.pp) set_figure_params() (stream2.settings method) set_workdir() (stream2.settings method)

stream() (in module stream2.pl) stream2 module stream_sc() (in module stream2.pl)

V

variable_genes() (in module stream2.pl)

violin() (in module stream2.pl)